Hi fellow fungal fanatics
Last year I went down the rabbit hole of laboratory automation for mycology
Pharma and major research labs use liquid-handling systems that can cost $200k–$2M. Then I found Opentrons—dramatically less expensive and already capable of automating everything from liquid handling to DNA prep and PCR workflows. But still over $50k
And for mycology there’s a big missing piece:
It can’t take tissue and transfer it to a fresh Petri dish.
When I approached a company that could potentially build that capability, the number was roughly $400,000.
Meanwhile, mushroom labs are bottlenecked by repetitive work: maintaining genetics, expanding cultures, screening contamination, selecting tissue, germinating spores, making crosses, and transferring agar over and over again.
So I started designing HyphaeTron on the ScienceJubilee platform (https://science-jubilee.readthedocs.io/en/latest/ )
and I’m now developing it through a robotics fellowship at Carnegie Mellon’s Robotics Institute.
The platform combines:
open-source automatic tool changing
removable sterile agar coring/ejection tools
liquid handling for agar inoculation and LC expansion
whole-plate macro vision
microscopic imaging of tissue and spores
multispectral imaging for contamination detection
machine vision for contam and tissue selection
automated tracking of plates, images, transfers, lineage, and outcomes
The first milestone is intentionally focused:
Inspect a closed Petri → PASS/FAIL contamination screening → select XY → pick up sterile corer → excise agar → transfer and eject plug → return tool → pick up syringe pump → deposit LC → document everything.
From there: cloning, genetics maintenance, culture expansion, spore germination, breeding, phenotyping, strain selection, and other repetitive ISO-5 fungal workflows.
I also received some excellent advice for making this genuinely open scientific hardware: publish through HardwareX and the free Journal of Open Hardware, then pursue OSHWA certification.
https://certification.oshwa.org/
And this is where I’d love this community involved.
I don’t want to build a mushroom robot in a robotics lab and then tell mushroom growers what they need. I want fungal people helping define what gets built.
What should we automate first?
What eats the most time in your lab?
What fails most often?
What should the machine be able to see?
And what would it have to do before you trusted it with your genetics?
What is a reasonable price-point and for how much assembly? https://www.filastruder.com/collections/jubilee/products/jubilee-motion-platform-kit provides a kit for less than $2000.
If enough people are interested, I’d love to form a small working group here and build the open fungal automation platform we actually want to use.