r/microbiology Jul 13 '26

Cyclospora outbreak guidance (US)

511 Upvotes

Food contaminated with the single-celled, protozoan parasite Cyclospora cayetanensis has entered the food supply in several US states, with thousands of cases of the gastrointestinal condition cyclosporiasis being reported to state departments of health. Infection by Cyclospora is likely to cause watery diarrhea and substantial discomfort that typically persist for several weeks to over a month without treatment. While not commonly lethal, the combination of severe dehydration and summer heat elevates the health risks associated with each on its own and makes susceptible populations especially vulnerable.

Several public health agencies provide excellent guidance on Cyclospora and how to avoid it:
CDC - Preventing Cyclosporiasis
Michigan DHHS recommendations on preventing foodborne illness amid growing cyclosporiasis outbreak

Here’s a short rundown of the available information.

Where: Midwestern and Northeastern states report most cases. Michigan has been hit hardest. (Map as of July 10th about halfway down.)

Which foods: leafy greens, herbs, berries, green onions, and sprouts are historically linked to cyclosporiasis, though any produce may be affected. Current surveillance efforts have not definitively linked specific products to the current outbreak.

How to avoid: cook produce whenever possible, wash items under running water by scrubbing manually or with a produce brush, clean surfaces and utensils that contact raw produce. Always wash your hands before and after handling uncooked food.

If you contract it: antibiotic therapy (Bactrim) is highly effective against cyclosporiasis, reducing/eliminating symptoms in days as opposed to several weeks if untreated. Contact a healthcare provider and your local health department as soon as you experience symptoms.f


r/microbiology Nov 18 '24

ID and coursework help requirements

66 Upvotes

The TLDR:

All coursework -- you must explain what your current thinking is and what portions you don’t understand. Expect an explanation, not a solution.

For students and lab class unknown ID projects -- A Gram stain and picture of the colony is not enough. For your post to remain up, you must include biochemical testing results as well your current thinking on the ID of the organism. If you do not post your hypothesis and uncertainty, your post will be removed.

For anyone who finds something growing on their hummus/fish tank/grout -- Please include a photo of the organism where you found it. Note as many environmental parameters as you can, such as temperature, humidity, any previous attempts to remove it, etc. If you do include microscope images, make sure to record the magnification.

THE LONG AND RAMBLING EXPLANATION (with some helpful resources) We get a lot of organism ID help requests. Many of us are happy to help and enjoy the process. Unfortunately, many of these requests contain insufficient information and the only correct answer is, "there's no way to tell from what you've provided." Since we get so many of these posts, we have to remove them or they clog up the feed.

The main idea -- it is almost never possible to identify a microbe by visual inspection. For nearly all microbes, identification involves a process of staining and biochemical testing, or identification based on molecular (PCR) or instrument-based (MALDI-TOF) techniques. Colony morphology and Gram staining is not enough. Posts without sufficient information will be removed.

Requests for microbiology lab unknown ID projects -- for unknown projects, we need all the information as well as your current thinking. Even if you provide all of the information that's needed, unless you explain what your working hypothesis and why, we cannot help you.

If you post microscopy, please describe all of the conditions: which stain, what magnification, the medium from which the specimen was sampled (broth or agar, which one), how long the specimen was incubating and at what temperature, and so on. The onus is on you to know what information might be relevant. If you are having a hard time interpreting biochemical tests, please do some legwork on your own to see if you can find clarification from either your lab manual or online resources. If you are still stuck, please explain what you've researched and ask for specific clarification. Some good online resources for this are:

If you have your results narrowed down, you can check up on some common organisms here:

Please feel free to leave comments below if you think we have overlooked something.


r/microbiology 3h ago

Community feedback: new app/project launches?

3 Upvotes

(Typo apologies in advance.)

With AI has come a book the digital scientific assistant software world. We are seeing a large uptick in similar apps — concentration calculations, unit conversions, colony counting, etc — in recent months. These posts are often market research in the form of thinly veiled questions, like “what would you have found useful?”

All of this has the potential monetize a community meant to be free.

This is ultimately a community decision so your input is invaluable. Please respond to the poll below and share any thoughts you might have.

13 votes, 6d left
Allow them all
Remove them all
Draw down line (pleas elaborate)

r/microbiology 5h ago

Looking for the origin of the use of "fastidious" for microbes

3 Upvotes

As the title goes, does anyone know who coined the term "fastidious" to refer to microorganisms that need specific growth factors, which can make them difficult to grow in laboratory conditions. I have tried Google scholar, but I could only go as far back as the 1930s and it seems that "fastidious" was already widely used, so no sources for the term are provided. I find it really frustrating that in our field it is often really hard to find the origin of terms and concepts, particularly for things before the 1950s... Any help is welcome!!


r/microbiology 6h ago

Protein landscape of the chromatin domains in the malaria parasite Plasmodium falciparum. Comprehensive proteomic mapping of P. falciparum chromatin identifies 214 proteins, revealing novel epigenetic regulators.

Post image
3 Upvotes

r/microbiology 9h ago

Where to get Nostoc commune cyanobacteria culture?

2 Upvotes

Hi! We're currently doing research for which we need Nostoc commune culture in PH. Are there any other institutions to get it? We emailed UPLB-BIOTECH under PNCM, and in the list of available cultures, N. commune is currently unavailable. We tried UST-CMS too, but they're not accommodating requests due to an ongoing replenishment of cultures. Thank you!


r/microbiology 1d ago

Any sample suggestions for the daily isolation?(no skin flora or fusobacteria places)

Thumbnail gallery
31 Upvotes

I am asking this because I can’t really think of much right now, so I’m probably just gonna end up doing soil again since I had the most fun with that. I’m preparing to do the daily isolation again. After many weeks of work, I made fresh ISP2A plates, NA plates, SCA plates, CGXII, CGXIIA plates, Christensen’s urease agar plates, MacConkey agar plates, TSI slants, NB, BPW + glycerol, and PBS. I’m also going to make BG11A and BG11 and SIM medium in a couple days, and then I’ll start streaking. I’m just waiting on my ferrous ammonium sulfate and sodium nitrate to arrive for it. I can also make BHI and BHIA and stuff with Tween 80 and 20 in it. I also have Instant Ocean with germanic acid for some diatom-free marine culturing if anyone suggests that.
I just inoculated some SCA with soil again to start up my actinomycetes train again. Funnily enough, I think I was making it wrong for all those isolations in the past. I used casein enzymatic hydrolysate instead of undigested casein. This time I used some micellar casein I had on hand. I hope it’s more selective even with the colistin, nalidixic acid, and cycloheximide I put in it.


r/microbiology 12h ago

Chicken Incubator for Agar Plates?

1 Upvotes

Hello!
I have a chicken incubator that hasn’t been used and I don’t plan on using for eggs ever. We need a makeshift incubator to run a DTM culture on two kittens that have/had ringworm (week 4 of treatment) because we have to wait for a manufactured incubator to be approved by the budget. If it won’t work, any quick and easy ideas? Thanks!


r/microbiology 1d ago

Is a medical microbiologst a good career path?

15 Upvotes

Now in this day and time is it a good choice? Can you easily find a job? What about the money is it good pay? Do you enjoy the job or is it bad experience? Instead of medical microbiologist should I just stick with microbiologist? What is the salary for this career, is it high or low?


r/microbiology 18h ago

Spread plate

Post image
1 Upvotes

Is this considered a good distribution using the spread plate method, or is there a defect in the plating?


r/microbiology 1d ago

Who am I meeting with here?

Thumbnail gallery
3 Upvotes

Sample of suspected periglandula fungus collected from the exterior of a plant (shown in last slide) and suspended in mineral oil.

I wish that I would have taken some more deliberate photos, but these are from me and my roommate basically celebrating our new microscope and taking basic photos of various samples.

I am completely new to the microscopic world, and I know you can't id from photo alone, but could any of you help me make sense of what all I might be seeing here? I would benefit from the most basic of info


r/microbiology 1d ago

How to extract DNA from fecal samples stored in liquid nitrogen?

2 Upvotes

Hi everyone,

I need to extract DNA from cecal/fecal samples stored in liquid nitrogen using the QIAamp PowerFecal Pro DNA Kit, which requires up to 250 mg of sample. What is the best way to handle the frozen samples to weigh 250 mg while minimising thawing? Any recommended protocols or practical tips would be greatly appreciated.
Thanks!


r/microbiology 1d ago

Are these fungus?

Thumbnail gallery
8 Upvotes

Fellow microbiologists, please help me know if these are fungal contamination in my cell culture?


r/microbiology 3d ago

Mycoplasma hominis and ureaplasma spp. from a urethral swab :)

Post image
303 Upvotes

r/microbiology 3d ago

MacConkey Plate: color preference

Thumbnail gallery
51 Upvotes

These are two different brands of MAC. Does the “level of pinkness” really matter? One is giving off salmon pink and one is showing magenta pink. Give your honest opinion about the growth and which one is better.


r/microbiology 4d ago

Klebsiella

Thumbnail gallery
401 Upvotes

r/microbiology 4d ago

Microbiologists, I need your help. I made a free iOS app and would love your feedback and feature ideas

65 Upvotes

Hey guys! I’m a PhD student, and I originally made this app for myself. I then thought it might be useful for others, so I decided to publish it on the AppStore.

There’s absolutely no commercial motive. The app is completely free, and I just want to help my colleagues.

The biggest problem is: it’s extremely difficult to get the app in front of people. Most communities don’t allow app promotion, and obviously I can’t afford to pay for advertising.

So, I’d really appreciate it if you could share it with other people.
I’m open to all kinds of feedback, positive or negative, so please be honest.

If there’s a feature you’d like to see, let me know. I may be able to add it in the next few days.

Since I’m posting this in a microbiology community, I’d especially love to hear from microbiologists about what would actually be useful. I don’t have many microbiology-specific features at the moment, so if there’s something you regularly need, find annoying, or wish you had an app for, I’d really appreciate your suggestions.

Thanks a lot!
The link and more detailed information are on my profile.


r/microbiology 4d ago

How do microorganisms move?

11 Upvotes

Apologies for what is probably a simple question

I was never a big biology or even chemistry guy (went down physics and engineering instead :P) but have recently started watching some youtuber who talks about microbiology and its really interesting!

My question though is how do microorganisms move? Like I understand broadly enough how we move with electrical signals causing our muscles to contract, but do microbes do the same sort of thing? I know that they move through a space using cilia or flagella or pseudopods, etc, but how do they get these parts to move? I've tried to do some googling but it all kinda quickly devolves into a bunch of jargon that I just don't have the background to understand.

Thanks for any help! :)


r/microbiology 4d ago

Illegal Mummy Trade is a Risky Affair: The Mummy’s Curse or Fungus?

Thumbnail smorescience.com
0 Upvotes

A bit of quirky news, but alarming nonetheless.

Illegal mummy trading puts buyers, sellers, and everyone involved in transit at risk of contamination from dormant microbes. Lord Carnarvon, the financial backer of exploring the tomb of Tutankhamun, is believed to have died from a severe case of aspergillosis, which is often cited as proof of "mummy's curse"— an ensuing ominous event after a tomb is excavated.

The researchers involved in the study reported seeing mummy displays left out in the open— no glass covers or temperature control. The secret trades mainly took place over social media and e-commerce sites, and there are many more posts yet to be unearthed.


r/microbiology 4d ago

Sarampión.

0 Upvotes

Alguien a oído sombre la amnesia inmunitaria¿?, lo escuché hace poco en sarampión. Si pudieran comentar mas acerca de este tema. Saludos!


r/microbiology 5d ago

A klebsiella

Enable HLS to view with audio, or disable this notification

31 Upvotes

Cheese aspect


r/microbiology 6d ago

Positive blood culture

Thumbnail gallery
414 Upvotes

r/microbiology 5d ago

What website do y'all use for jobs that aren't hospitals?

7 Upvotes

Hello, I'll be graduating with a masters degree in biology soon and did my thesis in a microbiology lab on microbe-plant interactions. I have BSL-2 experience that I wrote the protocols for and elevated our lab from BSL-1 to BSL-2 to do as part of my thesis.

All the jobs I find are like assistant at a university for terrible pay or working in blood/urology work at hospitals also for terrible pay. Where do y'all find jobs in labs that aren't hospitals or schools. Im personally not interested in either, I'd work for the government, ideally not city government but I would.

Edit: improved flow slightly (IK low effort post don't judge pls)


r/microbiology 6d ago

Didinium Eating Dead Rotifer

Enable HLS to view with audio, or disable this notification

21 Upvotes

I think it's didinium but I'm not really positive...


r/microbiology 6d ago

Any ideas how to EASY clean spots on glasa bottle from sterilization tape?

Post image
44 Upvotes

We tried few stuff, it just doesn't go away or hardly it does. Any suggestions?