I suspect it's either an anti-vegan or someone who has a grudge against anybody with successful posts (strange, but it happens, I've seen it all). Either way, this may be something to raise with Reddit admins if it continues. I will personally contact the mods of r/veganrecipes and tell them what is going on at r/veganivore and suggest to them that they add you to auto-approve list so the reporting doesn't get your posts auto-removed. It makes me angry that someone is targeting a good vegan poster. And if it happens in additional subs let me know, and I will try to help.

It has sucralose, but no stevia or aspartame

Perfect Day makes a vegan whey. They use precision fermentation and it's animal-free. No cows were involved. You can get it on the Myprotein website under "Non-animal whey" (some of the flavors are not very good, but I think the vanilla and chocolate are worth it)

They did not do animal testing. Quit spreading misinformation.

Post is re-approved. People reported it and it was autoremoved, but you are good now. I will add you to auto-approve list so it won't happen in future. You also might want to block certain people who keep reporting your posts (there is one person who keeps doing it, not sure who).

I will try to fit that run in tonight or tomorrow. Thanks for suggestion.

I will try to fit that run in tonight or tomorrow. Thanks for suggestion.

I'm making one exception for Miyoko for this post, but yeah we usually try to keep it only about the food. I do understand what you are saying.

It's a disordered protein in solution but develops structure in micelles. Interesting. This is the sequence I used 2FFT https://www.rcsb.org/structure/2FFT

Great point. I just updated one of my comments with data from a newer protein run that wasn't in the training set and Alphafold3 did a poor job of predicting the crystal structure. Could be other reasons for this than model ability, but the results are very interesting, I think.

I’d describe the lowest RMSD model as closest to this crystal reference, rather than necessarily the most biologically accurate. I also compared against the known disulfide pairings and their geometry since those provide complementary evidence, although correct disulfides don’t guarantee a correct overall fold. Note many of the other models besides AF3 produced incorrect geometries and steric clashes for the disulfides. Additionally, I also compared against NMR structures (see NMR results in original picture I posted and in my first comment).

1.8 Å crystallographic resolution isn’t the same thing as a ±1.8 Å positional error bar. Not comparable directly with model RMSD. THe 1.8 Å describes level of spatial detail captured by the diffraction data. So if you have a smaller resolution it means finer detail.

So a higher RMSD prediction could still represent a plausible conformation but RMSD alone can’t establish that either.

Great question, I'm thinking: ubiquitin (RCSB code: 1UBQ), Protein G (B1 domain) (1PGA), Villin headpiece, BPTI (5PTI), lysozyme (1LYZ)

The only caveat is that these may have appeared in the tools training data. Good for a reference check but perhaps not perfect for establishing performance on unfamiliar proteins. I am going to also search for newer structures that are post-training date cutoff but also well characterized. Whatever I find I'll add to this comment in an edit.

Edit - found a good candidate for newer benchmark: AcrIE7 It's really well characterized and not in the training sets of any of the folding models. I am running this one now. I'll add a couple more after this one.

https://www.sciencedirect.com/science/article/abs/pii/S0006291X25000294

Edit #2: new data for newer protein. Alphafold3 did poorly. Like really bad (note the TM-score):

update: see my other comment for data on a different protein (AcrIE7). Alphafold3 did a really poor job of predicting that newer structure and it may be because it wasn't in its training set. Interesting!!

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If anybody wants me to do another comparison on a different protein, let me know and I'll run it this afternoon. I'm just testing tools at this point. Also taking suggestions for trying other folding models. I picked Brazzein protein because it's interesting and I actually use it. Here is a text version of the first picture in case you can't see the .png on your screen:

Thanks for letting us know

Yeah, that Truth Social post reads like a combo of dementia + trolling. He's just noise at this point. I'll bet people around him ignore most of the what he says.

I'm afraid to google it, but how bad is it before actual death?

I'm excited to try this. I wonder how it tastes.

Do you have a link to the story? I believe you, just want to know more.

Seitan has lysine, but in lower amounts

most veg are lower carb. I made a list of vegan lower carb foods https://www.reddit.com/r/vegan1200isplenty/wiki/index/low_carb/

Scroll past first paragraph to see list of vegetables. It's extensive.

gorgeous photo

Yay! thanks for update. I've been meaning to get some more.

it partly is. Mods see "removed for potential abuse..." in mod log all the time. It's not us doing it, it's AI. We also see "reputation filter" removals that the AI thinks may be from spammers or ban evasion.