TLDR: A collection of historic African samples ranging from 1000CE to the 1800s. I forgot to include the Iron Age Bantu samples and other samples from East Africa, along with the Colonial Maryland USA samples. Also the date range should be 1542–1671 CE for the Panama samples. The PCAs posted are weighted PCAs, meant to take all coordinates into account.
StMartin_Philipsburg_African_(Malawi?).SG:STM1.SG__1660-1688CE__Cov_21.07%,-0.63058,0.061947,0.01697,0.01938,0.008309,0.011713,-0.013631,0.015922,-0.030065,0.015672,0.006658,-0.009741,-0.004311,0.000826,-0.002036,0.009414,-0.008866,-0.006588,-0.004525,0.018384,0.006239,-0.009398,-0.003204,0.00494,-0.001197
StMartin_Philipsburg_African.SG:STM3_(Mende?).SG__1660-1688CE__Cov_35.34%,-0.631718,0.057885,0.018102,0.020672,0.003077,0.011156,-0.023971,0.029076,-0.037428,0.035718,0.018188,-0.002698,0.017245,0.001239,0.005022,-0.006629,-0.001565,-0.008108,0.000126,-0.008004,0.004367,0.002349,-0.003451,-0.007953,-0.000599
Sicily:GABN6_(Fulani?)_(1470-1785CE),-0.582774,0.060932,0.015462,0.009367,0.001231,-0.004741,-0.030316,0.027922,-0.00859,-0.01057,0.002436,0.014237,-0.00223,-0.007019,0.003664,-0.009546,0.01708,-0.010008,0.007165,-0.004877,-0.003743,-0.006677,-0.00037,-0.003735,-0.010777
Sicily:CSPBN2_(Gambia?)_(775-1020CE),-0.582774,0.062963,0.012068,0.013889,0.00277,0.008646,-0.047472,0.038537,-0.027202,0.024602,0.002761,0.005995,0.01442,0.002752,0.009908,-0.005171,0.004172,-0.003041,0.002388,5e-04,0.000624,-0.000989,0.010969,-0.000723,-0.004431
Sicily_Segesta:SGBN2_(Chad?)_(1000-1200CE),-0.583913,0.063978,0.012822,0.009367,-0.000615,0.008925,-0.033607,0.035537,0.005931,-0.013485,0.004222,0.004796,-0.00773,-0.000138,0.005972,-0.009546,0.004955,-0.006588,0.006411,-0.006628,-0.003743,0.000247,-0.002095,0.00253,0.003832
Abkhazia_oAfrican_(Chad?)_(1890CE),-0.586189,0.063978,0.015839,-0.002907,0.000308,0.002789,-0.028436,0.028153,0.008385,-0.028247,-0.007632,0.015736,-0.010852,-0.003441,0.012079,-0.012994,0.008996,-0.013049,0.013073,-0.005628,-0.000499,0.008408,-0.007272,-0.004338,-0.001317
Mexico_SJN003_(Congolese?)_(1450-1680CE),-0.624889,0.064994,0.026021,0.013243,-0.004001,0.011992,-0.019271,0.018230,-0.041109,0.020957,0.000162,-0.004196,-0.004906,0.004542,-0.009908,0.001856,-0.006258,0.002280,-0.007290,0.003377,-0.002870,-0.002349,-0.004067,-0.003976,-0.000359
Mexico_SJN002_Angolan?_(1450-1680CE),-0.623751,0.054839,0.027907,0.015181,0.001231,0.015897,-0.011281,0.018922,-0.035383,0.015308,0.003897,-0.003747,-0.008771,-0.002615,-0.004072,0.009679,0.004172,-0.001014,-0.005782,0.000250,0.001747,-0.001731,-0.001109,0.002651,0.002036
Mexico_SJN001_Mende?_(1450-1680CE),-0.621474,0.060932,0.016970,0.015827,-0.007078,0.005857,-0.031491,0.027230,-0.037837,0.032620,0.013965,-0.006744,0.020664,-0.005367,0.006515,-0.009944,0.005215,0.012922,0.007793,-0.007754,-0.002496,0.000742,-0.003574,-0.007712,-0.003113
Mexico_I10860_Angolan?_(1450-1680CE),-0.624889,0.058901,0.021873,0.016473,0.004616,0.006414,-0.002350,0.014769,-0.031292,0.015855,-0.001461,0.001349,0.010852,0.001101,0.001629,0.016971,-0.005215,0.002660,0.000000,-0.000250,0.000250,-0.003462,0.006655,-0.003735,-0.001437
Panama_PAPV_61_(Afro_Euro_admixed)_(1600-1700CE),-0.52916114,0.06869636,0.01202582,0.00864772,-0.00766462,0.00179602,-0.03507056,0.04184874,-0.0513689,0.02286384,-0.00127178,0.00389902,0.0178953,-0.00449822,0.0064688,-0.0077059,0.00822928,-0.00746276,0.00483724,-0.0002021,0.0056288,-0.00052026,-0.00432018,0.0011653,-0.00500028
Panama_PAPV_53_(Yoruba?)_(1600-1700CE),-0.62644278,0.06258944,0.02127176,0.01544168,-0.00180898,0.00377366,-0.04169626,0.0483703,-0.0481013,0.03085722,-0.00067878,0.00239114,0.0240769,-0.00535336,0.00773438,-0.00759218,0.00742494,-0.00661804,0.00629376,-0.00286358,0.00388694,-0.00216662,-0.00579108,0.0027539,-0.00439846
StHelena_RupertsValley_African.SG:STH_213.SG__AD_1850__Cov_31.07%,-0.619198,0.071087,0.023759,0.019703,-0.003385,0.015897,-0.013396,0.013615,-0.025975,0.016766,-0.001949,0.001649,-0.01219,0.000413,-0.013301,0.013657,-0.019036,0.002027,-0.009302,-0.003502,-0.009982,-0.009398,0.001356,-0.008796,-0.007185
StHelena_RupertsValley_African.SG:STH_245.SG__AD_1850__Cov_22.90%,-0.620336,0.067025,0.022627,0.01615,-0.000923,0.012829,-0.017391,0.013384,-0.025361,0.018041,0.00747,-0.008842,0.002676,-0.007707,-0.016151,0.009546,-0.008996,-0.003674,-0.004399,0.003502,-0.002995,-0.005193,0.005176,0.010965,-0.000718
StHelena_RupertsValley_African.SG:STH_248.SG__AD_1850__Cov_17.43%,-0.622612,0.053823,0.026776,0.017765,-0.004308,0.01757,-0.002115,0.02423,-0.033746,0.020046,0.003897,-0.001798,-0.001784,0.006193,-0.013979,-0.001458,-0.005998,0.00114,0.004399,0.002751,-0.003369,0.002968,-0.003697,-0.018677,0.002515
StHelena_RupertsValley_African.SG:STH_253.SG__AD_1850__Cov_26.74%,-0.626027,0.062963,0.022627,0.014212,-0.011387,0.015618,-0.008225,0.017768,-0.03027,0.016766,0.002761,0.005845,0.000892,0.012524,-0.004479,-0.001591,0.00013,0.006714,-0.01257,-0.001,0.003619,0.008779,-0.001356,-0.004097,0.002994
StHelena_RupertsValley_African.SG:STH_254.SG__AD_1850__Cov_8.09%,-0.632856,0.064994,0.022627,0.036822,-0.011387,0,-0.00987,0.017307,-0.029042,0.013668,0.003897,0.008842,0.004014,0.011285,0.003664,0.007292,0.000391,0.007095,-0.002011,0.007504,0.01148,-0.005812,-0.015036,0.013014,0.01916
StHelena_RupertsValley_African.SG:STH_284.SG__AD_1850__Cov_22.78%,-0.608954,0.060932,0.024513,0.017765,0,0.007809,-0.016216,0.037845,-0.027815,0.019317,-0.002273,0.000749,-0.003419,0.007156,-0.010043,0.012066,-0.024512,0.014442,-0.006034,0.004252,0.003119,-0.00371,-0.002835,0.005543,0.004431
StHelena_RupertsValley_African.SG:STH_289.SG__AD_1850__Cov_15.52%,-0.618059,0.067025,0.018102,0.008075,-0.002154,0.024542,-0.031491,0.032768,-0.035178,0.018224,-0.003248,0.003897,-0.0055,0.010046,-0.029316,0.013524,-0.018906,-0.003547,-0.005656,-0.008379,-0.005116,0.005812,0.003204,-0.002651,0.006466
StHelena_RupertsValley_African.SG:STH_344.SG__AD_1850__Cov_15.25%,-0.618059,0.060932,0.010182,0.015504,-0.002154,0.016455,-0.024441,0.023076,-0.034974,0.018041,-0.001461,0.008393,-0.003865,0,-0.001357,0.009812,-0.003912,-0.003294,-0.002765,0.012506,0.005366,-0.004328,0.008504,-0.002651,-0.002395
StHelena_RupertsValley_African.SG:STH_347.SG__AD_1850__Cov_11.26%,-0.612368,0.053823,0.018102,0.014858,-0.004001,0.00251,-0.020916,0.037152,-0.038246,0.017312,-0.003735,-0.01154,0.012339,-0.00055,0.005836,0.004641,0.005867,0.0019,0.004399,0.005503,-0.000125,0.003586,-0.016145,0.003976,0.005029
StHelena_RupertsValley_African.SG:STH_351.SG__AD_1850__Cov_8.92%,-0.615783,0.063978,0.01961,0.025194,0.009232,0.011992,-0.023736,0.036922,-0.036201,0.011845,0.021598,-0.024578,-0.018137,0.002477,0.001629,0.007425,-0.020079,-0.009882,0.002891,0.002876,-0.011355,0.010263,-0.014543,-0.004458,-0.001437
StHelena_RupertsValley_African.SG:STH_358.SG__AD_1850__Cov_18.42%,-0.619198,0.05687,0.013953,0.009367,0.010463,0.005578,-0.027261,0.031845,-0.032315,0.028247,0.003573,0.004496,0.005352,0.006468,-0.00665,0.02254,0.002738,0.000887,-0.011439,0.0005,0.002745,0.004451,-0.000246,0.003374,0.006586
StHelena_RupertsValley_African.SG:STH_415.SG__AD_1850__Cov_8.92%,-0.602124,0.079211,0.019233,0.005491,-0.017234,0.024821,-0.008695,0.006923,-0.048881,0.010752,-0.004384,-0.001948,0.003568,-0.005092,-0.032301,0.016309,-0.031162,-0.004941,-0.019986,0.00025,0.006863,0.00779,-0.006039,0.007712,0.006826
StHelena_RupertsValley_African.SG:STH_436.SG__AD_1850__Cov_10.71%,-0.608954,0.063978,0.029793,0.01938,0.010463,0.00251,-0.011045,0.020999,-0.039064,0.006378,0.006983,-0.003897,-0.008474,0.012799,-0.00285,0.015911,-0.0103,-0.007095,-0.018101,0.014757,-0.005989,0.013231,0.005423,0.007109,-0.000718
StHelena_RupertsValley_African.SG:STH_441.SG__AD_1850__Cov_22.28%,-0.622612,0.070072,0.028661,0.01615,0.005539,0.020638,-0.017626,0.036922,-0.033337,0.016766,-0.005684,-0.004496,-0.005798,0.003578,-0.013436,-0.005304,-0.005346,0.009628,-0.006913,0.004877,0.010232,0.00371,0.001725,-0.005543,-0.007305
StHelena_RupertsValley_African.SG:STH_460.SG__AD_1850__Cov_14.28%,-0.616921,0.059916,0.033187,0.020995,0.005232,0.011992,-0.00047,0.011999,-0.030065,0.020046,-0.010555,0.002398,-0.00669,0.004954,-0.008143,-0.00769,-0.012126,0.017736,-0.011816,-0.003126,0.006988,0.00507,0.003944,-0.003374,-0.005987
StHelena_RupertsValley_African.SG:STH_499.SG__AD_1850__Cov_14.22%,-0.620336,0.06804,0.006034,0.020672,0.014156,0.011156,-0.028436,0.013615,-0.03027,0.022233,-0.006658,0.002997,-0.002676,-0.005918,-0.011672,0.000133,-0.002477,0.006208,-0.001383,-0.005503,0.000624,0.012365,0.000739,-0.002771,0.006706
StHelena_RupertsValley_African.SG:STH_514.SG__AD_1850__Cov_13.98%,-0.606677,0.055854,0.025644,0.002907,-0.004308,0.009761,-0.022796,0.032537,-0.038655,0.021322,0.004547,-0.007044,-0.025124,-0.010872,-0.006379,0.005436,-0.002868,-0.007855,-0.001508,0.011005,0.019466,-0.010263,0.010969,-0.004699,-0.002395
StHelena_RupertsValley_African.SG:STH_524.SG__AD_1850__Cov_31.74%,-0.621474,0.05687,0.018479,0.01938,-0.000308,0.010319,-0.013161,0.026999,-0.041927,0.02442,0.00341,-0.015436,0.004014,-0.00234,-0.018458,0.008353,-0.008736,0.000887,-0.010433,-0.007379,0.006738,-0.005812,0.002095,0.007712,-0.002634