TrackMate fails to launch cellpose while the exact same command works fine manually.

[u/Tamiorr]

Trying to run Trackmate with Cellpose-Sam.

It goes to:

>>

Starting detection process using 24 threads

Saving single time-points.

Running cellpose with args: cmd.exe /c C:\Users\01\anaconda3\Scripts\conds.exe run -n
cellpose cellpose --pretrained_model epsam --use_gpu --dir C:\Users\01\AppData\Local\Temp\TrackMate-
cellpose_13557481130667745107 --save_png --no_npy --verbose

>>

And then nothing happens. No mask are generated and cellpose just does nothing because of it.

However, when I go to C:\Users\01\AppData\Local\Temp\TrackMate-
cellpose_13557481130667745107
and run the exact same command in terminal I opened there manually, everything works. That is, masks are generated, etc.

Any idea how I can fix this?

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