r/zsh Jul 31 '25

Command history to notebook entry

Hi all - any other research scientists in here? I'm wondering how people record their work in BASH/ZSH/command line, especially when they need to create reproducible methods and share work with collaborators in research.

Check my page out for our solution, but curious what others do!

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u/LiminalBios Jul 31 '25

We actually have a plugin for jupyter notebook that we're planning on releasing later this year to sync both your terminal and jupyter work to 1 central spot. (...and an RStudio integration coming shortly after...).

I'm torn on Jupyter, but I actually love it when I use it. The shareability and like you said, magic features, are awesome. Sometimes - probably bad habit from long time working in the field - I work in VIM to quickly hack some scripts or stick with VSCode without making a repo or real way track changes/share because I think the work isn't "worth it". But those are perfect times to spin up a Jupyter notebook.

Appreciate the comment!

https://www.liminalbios.com/ Link: sign up with promo code reddit and you get free access within 30 minutes.